As a long time fellow traveler in the land of Literate Programming, I must ask how you created the document---by hand or with tools and if tools, which ones?
Basically, you write markdown comments in the code and there is a Makefile that uses awk and sed to grab them out, cat some things together and pass it to an awesome LaTeX stylesheet written by Pete Kazmier. See: https://github.com/redline6561/cl-6502/tree/master/src/doc and the Makefile in the parent directory.
